In silico design of short hairpin RNA (shRNA)Molecules for DNA pol gene of Contagious Ecthyma virus (ORFV)


Λέξεις-κλειδιά:
In silico knockdown ORFV RNAi shRNA
L ASADI SAMANI
B SAFFAR
A MOKHTARI
E AREFIAN
Περίληψη
NO ABSTRACT AVAILABLE
Λεπτομέρειες άρθρου
  • Ενότητα
  • Research Articles
Λήψεις
Τα δεδομένα λήψης δεν είναι ακόμη διαθέσιμα.
Αναφορές
Baghban-Kohnehrouz, B., & Nayeri, S. (2016). Design, simplified cloning, and in-silico analysis of multisite small interfering RNA-targeting cassettes. Molecular biology research communications, 5(1), 31.
Barata, P., Sood, A. K., & Hong, D. S. (2016). RNA-targeted therapeutics in cancer clinical trials: Current status and future directions. Cancer treatment reviews, 50, 35-47.
Bergqvist, C., Kurban, M., & Abbas, O. (2017). Orf virus infection. Reviews in medical virology, 27(4), e1932.
Bofill-De Ros, X., & Gu, S. (2016). Guidelines for the optimal design of miRNA-based shRNAs. Methods, 103, 157-166. doi:10.1016/j.ymeth.2016.04.003
Bora, D., Venkatesan, G., Bhanuprakash, V., Balamurugan, V., Prabhu, M., Sankar, M. S., & Yogisharadhya, R. (2011). TaqMan real-time PCR assay based on DNA polymerase gene for rapid detection of Orf infection. Journal of virological methods, 178(1-2), 249-252.
Fakhr, E., Zare, F., & Teimoori-Toolabi, L. (2016). Precise and efficient siRNA design: a key point in competent gene silencing. Cancer Gene Therapy, 23(4), 73-82. doi:10.1038/cgt.2016.4
Fleming, S., Wise, L., & Mercer, A. (2015). Molecular Genetic Analysis of Orf Virus: A Poxvirus That Has Adapted to Skin. Viruses, 7(3), 1505-1539. doi:10.3390/v7031505
Haussecker, D. (2014). Current issues of RNAi therapeutics delivery and development. Journal of controlled release, 195, 49-54.
Hosamani, M., Scagliarini, A., Bhanuprakash, V., McInnes, C. J., & Singh, R. K. (2009). Orf: an update on current research and future perspectives. Expert review of anti-infective therapy, 7(7), 879-893.
J Blake, S., F Bokhari, F., & AJ McMillan, N. (2012). RNA interference for viral infections. Current Drug Targets, 13(11), 1411-1420.
Kanasty, R. L., Whitehead, K. A., Vegas, A. J., & Anderson, D. G. (2012). Action and reaction: the biological response to siRNA and its delivery vehicles. Molecular Therapy, 20(3), 513-524.
Lambeth, L. S., & Smith, C. A. (2013). Short hairpin RNA-mediated gene silencing. In siRNA Design (pp. 205-232): Springer.
Li, J., Song, D., He, W., Bao, Y., Lu, R., Su, G., Gao, F. (2013). Rapid detection of orf virus by loop-mediated isothermal amplification based on the DNA polymerase gene. Archives of virology, 158(4), 793-798.
Manjunath, N., Wu, H., Subramanya, S., & Shankar, P. (2009). Lentiviral delivery of short hairpin RNAs. Advanced drug delivery reviews, 61(9), 732-745.
Matveeva, O. V., Kang, Y., Spiridonov, A. N., Sætrom, P., Nemtsov, V. A., Ogurtsov, A. Y., . . . Shabalina, S. A. (2010). Optimization of duplex stability and terminal asymmetry for shRNA design. PloS one, 5(4), e10180.
Mcintyre, G. J., Yu, Y.-H., Lomas, M., & Fanning, G. C. (2011). The effects of stem length and core placement on shRNA activity. BMC molecular biology, 12(1), 34.
Nandi, S., De, U. K., & Chowdhury, S. (2011). Current status of contagious ecthyma or orf disease in goat and sheep-A global perspective. Small Ruminant Research, 96(2-3), 73-82.
Paddison, P. J., Caudy, A. A., Bernstein, E., Hannon, G. J., & Conklin, D. S. (2002). Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes & development, 16(8), 948-958.
Protocol-online. (2009). Retrieved from http://www.protocol-online. org/prot/Protocols/Rules-of-siRNA- design-for-RNA-interference--RNAi--3210.html
Qureshi, A., Tantray, V. G., Kirmani, A. R., & Ahangar, A. G. (2018). A review on current status of antiviral siRNA. Reviews in Medical Virology, 28(4), e1976. doi:10.1002/rmv.1976
Reynolds, A., Leake, D., Boese, Q., Scaringe, S., Marshall, W. S., & Khvorova, A. (2004). Rational siRNA design for RNA interference. Nature biotechnology, 22(3), 326.
Taxman, D. J., Moore, C. B., Guthrie, E. H., & Huang, M. T.-H. (2010). Short hairpin RNA (shRNA): design, delivery, and assessment of gene knockdown. In RNA therapeutics (pp. 139-156): Springer.
Wang, G., He, W., Song, D., Li, J., Bao, Y., Lu, R., Gao, F. (2014). In vitro RNA interference targeting the DNA polymerase gene inhibits orf virus replication in primary ovine fetal turbinate cells. Archives of virology, 159(5), 915-920.
Yin, R., Ding, Z., Liu, X., Mu, L., Cong, Y., & Stoeger, T. (2010). Inhibition of Newcastle disease virus replication by RNA interference targeting the matrix protein gene in chicken embryo fibroblasts. Journal of virological methods, 167(1), 107-111.
Zeedan, G., Abdalhamed, A., Ghoneim, N., & Ghazy, A. (2015). Isolation and Molecular characterization of Contagious Ecthyma (ORF) Virus from Small Ruminants and Human in Egypt. Journal of Veterinary Advances, 5(10), 1139-1146.
Zhao, Z., Wu, G., Zhu, X., Yan, X., Dou, Y., Li, J., Cai, X. (2012). RNA interference targeting virion core protein ORF095 inhibits Goatpox virus replication in Vero cells. Virology journal, 9(1), 48.